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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411
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        About MultiQC

        This report was generated using MultiQC, version 1.28

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        This report has been generated by the rachadele/nextflow_eval_pipeline analysis pipeline.
        Report generated on 2025-07-03, 09:41 PDT based on data in: /space/grp/rschwartz/rschwartz/nextflow_eval_pipeline/hsap/b9/9484612f8b2d7255dc3b466bb67b3e/PTSDBrainomics

        Cell type correctness

        Composition per cell type of correctly predicted cells.

        Created with MultiQC

        Cell type outlier composition

        Created with MultiQC

        Correct vs incorrect outlier composition

        Created with MultiQC

        Cell type markers

        Expression of select markers. Count are averaged across cell-type labels and z-score normalized across genes.

        Created with MultiQC

        PTSDBrainomics | 1203524 | outliers

        PTSDBrainomics | 1203516 | outliers

        PTSDBrainomics | predicted subclass uma

        PTSDBrainomics | 1203511 | outliers

        PTSDBrainomics | 1203523 | outliers

        PTSDBrainomics | correct subclass uma

        PTSDBrainomics | 1203508 | outliers

        PTSDBrainomics | subclass uma

        PTSDBrainomics | 1203506 | outliers

        PTSDBrainomics | 1203515 | outliers

        PTSDBrainomics | 1203512 | outliers

        PTSDBrainomics | 1203518 | outliers

        PTSDBrainomics | 1203520 | outliers

        PTSDBrainomics | sample id uma

        PTSDBrainomics | 1203509 | outliers

        PTSDBrainomics | 1203510 | outliers

        PTSDBrainomics | 1203522 | outliers

        Ptsdbrainomics | Sample Correct

        Created with MultiQC

        PTSDBrainomics | 1203517 | outliers

        PTSDBrainomics | 1203519 | outliers

        PTSDBrainomics | 1203513 | outliers

        PTSDBrainomics | 1203521 | outliers

        Ptsdbrainomics | Actual Vs Predicted

        Created with MultiQC

        PTSDBrainomics | 1203514 | outliers

        PTSDBrainomics | 1203507 | outliers

        MultiQC v1.28 - Written by Phil Ewels, available on GitHub.

        This report uses Plotly, jQuery, jQuery UI, Bootstrap and FileSaver.js.